By Mihai Ionescu, Andrei Păun, Gheorghe Păun, Mario J. Pérez-Jiménez (auth.), Chengde Mao, Takashi Yokomori (eds.)
This ebook constitutes the completely refereed post-proceedings of the eleventh overseas Workshop on DNA established pcs, DNA11, held in London, ON, Canada, in June 2005.
The 34 revised complete papers offered have been conscientiously chosen in the course of rounds of reviewing and development from an preliminary overall of seventy nine submissions. The wide-ranging themes comprise in vitro and in vivo biomolecular computation, algorithmic self-assembly, DNA machine layout, DNA coding idea, and membrane computing.
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Extra resources for DNA Computing: 12th International Meeting on DNA Computing, DNA12, Seoul, Korea, June 5-9, 2006, Revised Selected Papers
C) Try rules c(h, S, S , X); if any rule was applied, go to step 10. (d) Try rules d(h, S, S , X); if any rule was applied, go to step 10. (e) If Elementary then: if in = 1, then Try rules e(h, S, S , X), else Try rules e(h, S, X, S ) 10. in could only be created by an application of an (e)-type rule at the n-th step. */ 11. M 12. Return S and exit. Procedures Try rules a – Try rules e are implemented as follows: Parameters: h – label of the membrane processed S – original state of the membrane S – ﬁnal state of the membrane T – state of another membrane eventually acting at the operation 40 P.
Natural Computing, 2–3 (2003), 287–298. 12. C. Zandron, C. Ferretti, G. Mauri, Solving NP-complete problems using P systems with active membranes, in: I. S. J. ), Unconventional Models of Computation, Springer-Verlag, London, 2000, pp. 289–301. 13. L. Balcazar, J. Diaz, J. Gabarro, Structural Complexity II, Springer-Verlag, Berlin, 1991. 46 P. Sos´ık and A. Rodr´ıguez-Pat´ on 14. D. J. B. ), DNA Based Computers, vol. 27 of DIMACS: Series in Discrete Mathematics and Theoretical Computer Science, American Mathematical Society, 1995, pp.
The simulation algorithm is described in a high-level language; in principle, however, it could be performed by a Turing machine, too. 38 P. Sos´ık and A. Rodr´ıguez-Pat´ on Notice also that the simulated P system is conﬂuent, but the simulation is done in a deterministic way. As the rules in membranes are simulated always in the same order, we simulate only one possible sequence of conﬁgurations of the P system. This corresponds to introducing a weak priority between rules: (i) bottom-up priority between rules associated to diﬀerent membranes, (ii) priority between rules in the same membrane, given by the order in which they are listed, including the priority between types (a), (b), (c), (d), (e), (f), in this order.